ma-compbio-lab/SkillFoundry
Risk mix
- 267 Low risk
- 0 Review before installing
- 0 High risk
What these skills can do:
- Runs commands on your computer: 257 of 267
- Connects to the internet: 31 of 267
Badge for your README
[](https://zalavijaysinh.github.io/skilltrust/repos/ma-compbio-lab/SkillFoundry/)
267 skills
- 100 Low riskscanpy-qc-starter
- 97 Low riskclinicaltrials-study-search
- 97 Low riskensembl-gene-lookup
- 97 Low riskncbi-gene-search
- 97 Low riskslurm-job-array-starter
- 97 Low riskcrossref-metadata-search
- 97 Low riskeuropepmc-method-triage
- 97 Low riskncbi-pubmed-search
- 97 Low riskopenalex-literature-search
- 97 Low riskrcsb-pdb-entry-summary
- 97 Low riskrcsb-pdb-search
- 97 Low riskdash-scientific-dashboard-starter
- 95 Low riskagronomic-experiment-design-starter
- 95 Low riskcrop-genomics-and-breeding-starter
- 95 Low riskdisease-and-stress-detection-starter
- 95 Low riskfood-chemistry-and-quality-modeling-starter
- 95 Low riskplantcv-plant-phenotyping-starter
- 95 Low riskprecision-agriculture-sensing-starter
- 95 Low risksoil-rhizosphere-microbiome-analysis-starter
- 95 Low riskyield-forecasting-starter
- 95 Low riskehr-preprocessing-starter
- 95 Low riskfairlearn-bias-audit-starter
- 95 Low risklifelines-kaplan-meier-starter
- 95 Low riskmissing-data-handling-starter
- 95 Low riskphenotyping-starter
- 95 Low riskprivacy-preserving-analysis-starter
- 95 Low risktime-series-clinical-modeling-starter
- 95 Low riskase-geometry-optimization-starter
- 95 Low riskdeepchem-molgraph-featurization
- 95 Low riskfree-energy-workflows-starter
- 95 Low riskopenmm-forcefield-assignment-starter
- 95 Low riskopenmm-langevin-dynamics-starter
- 95 Low riskopenmm-system-minimization
- 95 Low riskpsi4-single-point-energy
- 95 Low riskqm-mm-workflows-starter
- 95 Low riskquantum-chemistry-setup-starter
- 95 Low riskrdkit-conformer-generation-starter
- 95 Low risktrajectory-analysis-starter
- 95 Low riskfrictionless-tabular-validation-starter
- 95 Low riskmetadata-harmonization-starter
- 95 Low risknumcodecs-compression-decompression-starter
- 95 Low riskpyarrow-format-conversion-starter
- 95 Low riskrocrate-metadata-bundle-starter
- 95 Low risksynthetic-toy-dataset-generator-starter
- 95 Low riskzarr-chunked-array-store-starter
- 95 Low riskadmet-modeling-starter
- 95 Low riskbenchmarks-and-evaluation-starter
- 95 Low riskdeepchem-circular-featurization
- 95 Low riskmolecular-generation-starter
- 95 Low riskqsar-property-prediction-starter
- 95 Low riskrdkit-molecular-descriptors
- 95 Low riskrdkit-molecule-standardization
- 95 Low riskrdkit-scaffold-analysis-starter
- 95 Low riskvirtual-screening-starter
- 95 Low riskclimate-reanalysis-access-starter
- 95 Low riskgeopandas-spatial-join-starter
- 95 Low riskphysics-informed-forecasting-starter
- 95 Low riskraster-vector-ingestion-starter
- 95 Low riskrasterio-windowed-raster-preprocessing-starter
- 95 Low riskscientific-map-and-dashboard-generation-starter
- 95 Low riskspatial-interpolation-and-uncertainty-starter
- 95 Low riskxarray-climate-cube-starter
- 95 Low riskclimate-ecology-integration-starter
- 95 Low riskconservation-genomics-and-edna-starter
- 95 Low riskecosystem-remote-sensing-starter
- 95 Low riskpopulation-dynamics-and-ecological-forecasting-starter
- 95 Low riskscikitbio-tree-comparison-starter
- 95 Low riskwildlife-sensing-and-bioacoustics-starter
- 95 Low riskatac-seq-starter
- 95 Low riskchip-seq-starter
- 95 Low riskcooler-hic-matrix-summary-starter
- 95 Low riskcut-run-cut-tag-starter
- 95 Low riskfootprinting-starter
- 95 Low riskmacs3-peak-calling-starter
- 95 Low riskmethylation-analysis-starter
- 95 Low riskmotif-analysis-starter
- 95 Low riskmultiome-integration-starter
- 95 Low riskbcftools-variant-filtering-starter
- 95 Low riskcomparative-genomics-starter
- 95 Low riskfastqc-multiqc-read-qc-starter
- 95 Low riskfine-mapping-starter
- 95 Low riskgermline-pipelines-starter
- 95 Low riskgwas-starter
- 95 Low risklong-read-genomics-starter
- 95 Low riskphylogenomics-starter
- 95 Low riskpolygenic-risk-scoring-starter
- 95 Low riskquantification-starter
- 95 Low risksomatic-pipelines-starter
- 95 Low risksourmash-signature-compare-starter
- 95 Low riskvariant-calling-starter
- 95 Low riskcluster-safe-installs-starter
- 95 Low riskcpu-memory-tuning-starter
- 95 Low riskgpu-jobs-starter
- 95 Low riski-o-aware-workflows-starter
- 95 Low riskinteractive-debug-workflows-starter
- 95 Low riskmulti-node-jobs-starter
- 95 Low riskscratch-space-usage-starter
- 95 Low riskslurm-job-debug-template
- 95 Low riskslurm-monitoring-accounting-starter
- 95 Low riskcell-tracking-starter
- 95 Low riskmicroscopy-pipelines-starter
- 95 Low riskmulti-modal-image-omics-integration-starter
- 95 Low riskpathology-histology-workflows-starter
- 95 Low riskrepresentation-learning-for-scientific-images-starter
- 95 Low riskskimage-otsu-segmentation-starter
- 95 Low riskskimage-regionprops-feature-extraction
- 95 Low riskgenerative-design-for-materials-starter
- 95 Low risklaboratory-to-simulation-data-linkage-starter
- 95 Low riskmaterials-benchmark-datasets-starter
- 95 Low riskmatminer-composition-featurization
- 95 Low riskmatminer-property-regression-starter
- 95 Low riskmatminer-toy-property-prediction-starter
- 95 Low riskphase-stability-analysis-starter
- 95 Low riskpymatgen-crystal-structure-parsing-starter
- 95 Low risksurrogate-models-for-simulation-starter
- 95 Low riskdatasketch-resource-deduplication-starter
- 95 Low riskdeprecation-migration-starter
- 95 Low riskdocumentation-quality-improvement-starter
- 95 Low riskfreshness-audits-starter
- 95 Low riskprecommit-regression-testing-starter
- 95 Low riskrapidfuzz-skill-deduplication-starter
- 95 Low risktaxonomy-refinement-starter
- 95 Low riskdifferential-metabolomics-starter
- 95 Low riskfeature-annotation-starter
- 95 Low risklipidomics-starter
- 95 Low riskmetabolomics-preprocessing-starter
- 95 Low riskmicrobiome-analysis-starter
- 95 Low riskmulti-omics-integration-starter
- 95 Low riskbrain-atlas-integration-starter
- 95 Low riskcomputational-psychiatry-and-clinical-neuroinformatics-starter
- 95 Low riskmne-connectivity-graph-starter
- 95 Low riskmne-eeg-preprocessing-starter
- 95 Low riskmultimodal-neuroimaging-fusion-starter
- 95 Low riskneural-decoding-and-encoding-models-starter
- 95 Low risknibabel-nifti-summary-starter
- 95 Low risknilearn-fmri-denoising-starter
- 95 Low riskspike-sorting-and-electrophysiology-starter
- 95 Low riskastropy-fits-image-summary-starter
- 95 Low riskcosmology-and-sky-survey-analysis-starter
- 95 Low riskdifferentiable-simulation-starter
- 95 Low riskhigh-energy-detector-data-analysis-starter
- 95 Low riskinverse-problems-and-scientific-reconstruction-starter
- 95 Low riskoperator-learning-and-surrogate-physics-models-starter
- 95 Low riskpde-cfd-simulation-workflows-starter
- 95 Low riskscientific-time-series-anomaly-detection-starter
- 95 Low riskspectroscopy-and-signal-extraction-starter
- 95 Low risksymbolic-discovery-of-physical-laws-starter
- 95 Low riskdifferential-proteomics-starter
- 95 Low riskinterface-analysis-starter
- 95 Low riskms-proteomics-preprocessing-starter
- 95 Low riskprotein-embeddings-starter
- 95 Low riskprotein-identification-quantification-starter
- 95 Low riskprotein-language-model-function-analysis-starter
- 95 Low riskprotein-structure-cross-links-starter
- 95 Low riskptm-analysis-starter
- 95 Low risksequence-to-function-modeling-starter
- 95 Low riskconda-mamba-pixi-uv-starter
- 95 Low riskcwl-commandlinetool-starter
- 95 Low riskcwl-workflows-starter
- 95 Low riskdocker-apptainer-singularity-starter
- 95 Low riskenvironment-locking-starter
- 95 Low riskgithub-actions-scientific-ci-starter
- 95 Low risknextflow-hello-workflow
- 95 Low risknf-core-pipeline-list
- 95 Low riskpapermill-parameterized-notebook-starter
- 95 Low risksnakemake-toy-workflow-starter
- 95 Low riskwdl-task-starter
- 95 Low riskwdl-workflows-starter
- 95 Low riskworkflow-interoperability-and-translation-starter
- 95 Low riskactive-learning-experiment-loops-starter
- 95 Low riskautomated-microscopy-acquisition-starter
- 95 Low riskautoprotocol-experiment-plan-starter
- 95 Low riskclosed-loop-optimization-for-experiments-starter
- 95 Low riskeln-lims-sample-tracking-integration-starter
- 95 Low risklaboratory-robotics-safety-and-monitoring-starter
- 95 Low riskopentrons-liquid-handling-protocol-starter
- 95 Low riskqcodes-parameter-sweep-starter
- 95 Low riskcode-generation-agents-for-scientific-tasks-starter
- 95 Low riskinspect-evaluation-harness-starter
- 95 Low risklanggraph-planning-execution-agent-starter
- 95 Low riskliterature-to-hypothesis-agents-starter
- 95 Low risklong-horizon-agent-memory-and-provenance-starter
- 95 Low riskskill-registry-router-starter
- 95 Low risktool-using-analysis-agents-starter
- 95 Low riskworkflow-generation-agents-starter
- 95 Low riskautomatic-differentiation-for-scientific-models-starter
- 95 Low riskchaospy-uncertainty-propagation-starter
- 95 Low riskdifferentiable-programming-for-simulators-starter
- 95 Low riskfipy-diffusion-pde-starter
- 95 Low riskinverse-problems-and-data-assimilation-starter
- 95 Low risknumerical-benchmarking-and-verification-starter
- 95 Low riskscipy-ode-simulation-starter
- 95 Low risksparse-iterative-linear-algebra-starter
- 95 Low riskbenchmark-table-mining-starter
- 95 Low riskclaim-assumption-limitation-extraction-starter
- 95 Low riskdataset-code-link-extraction-starter
- 95 Low riskfigure-table-caption-extraction-starter
- 95 Low riskprotocol-and-workflow-extraction-starter
- 95 Low riskreproducibility-cue-extraction-starter
- 95 Low riskscientific-summarization-starter
- 95 Low risksemantic-scholar-paper-triage-starter
- 95 Low risksemantic-scholar-review-paper-mining-starter
- 95 Low riskactive-learning-starter
- 95 Low riskarviz-posterior-diagnostics-starter
- 95 Low riskclustering-starter
- 95 Low riskdowhy-average-treatment-effect-starter
- 95 Low riskfoundation-models-for-biology-chemistry-science-starter
- 95 Low riskmultimodal-fusion-starter
- 95 Low riskoptuna-bayesian-optimization-starter
- 95 Low riskpydoe3-experimental-design-starter
- 95 Low riskpymc-bayesian-linear-regression-starter
- 95 Low riskrepresentation-learning-starter
- 95 Low riskscipy-statistical-testing-starter
- 95 Low risksimulation-based-inference-starter
- 95 Low riskumap-dimensionality-reduction-starter
- 95 Low riskbinding-site-analysis-starter
- 95 Low riskfold-comparison-starter
- 95 Low riskprotein-complex-metadata-starter
- 95 Low risksequence-structure-alignment-starter
- 95 Low riskstructure-parsing-and-cleanup-starter
- 95 Low riskstructure-to-sequence-cross-linking-starter
- 95 Low riskvisualization-starter
- 95 Low riskcausal-network-analysis-starter
- 95 Low riskclusterprofiler-custom-enrichment
- 95 Low riskfgsea-preranked-enrichment
- 95 Low risknetworkx-graph-construction-starter
- 95 Low risknetworkx-network-propagation-starter
- 95 Low riskregulatory-network-inference-starter
- 95 Low riskbulk-rna-seq-qc-and-normalization-starter
- 95 Low riskcellxgene-census-atlas-query-starter
- 95 Low riskisoform-transcript-level-analysis-starter
- 95 Low riskperturb-seq-starter
- 95 Low riskpseudobulk-analysis-starter
- 95 Low riskpydeseq2-differential-expression-starter
- 95 Low riskrna-velocity-starter
- 95 Low riskscanpy-cell-type-annotation-starter
- 95 Low riskscanpy-combat-batch-correction-starter
- 95 Low riskscanpy-dpt-trajectory-starter
- 95 Low riskscanpy-ranked-genes-starter
- 95 Low riskspatial-transcriptomics-starter
- 95 Low riskfigure-recreation-from-papers-starter
- 95 Low riskmatplotlib-publication-plot-starter
- 95 Low riskmkdocs-summary-catalog-starter
- 95 Low riskplotly-interactive-report-starter
- 95 Low riskskill-browser-mindmap-generation-starter
- 92 Low riskbiosamples-sample-search
- 92 Low riskchembl-molecule-search
- 92 Low riskencode-experiment-search
- 92 Low riskmetabolights-study-search
- 92 Low riskebi-proteins-entry-summary
- 92 Low riskpride-project-search
- 92 Low riskmulti-source-literature-brief
- 92 Low riskreactome-event-summary
- 92 Low riskreactome-identifiers-enrichment
- 92 Low riskstring-interaction-partners-starter
- 90 Low riskgbif-dataset-search-starter
- 90 Low riskgbif-species-occurrence-search-starter
- 90 Low riskminimap2-read-mapping-starter
- 90 Low riskpysam-sam-bam-summary-starter
- 90 Low riskregistry-link-audit-starter
- 90 Low riskinterpro-entry-summary
- 90 Low riskuniprot-sequence-feature-annotation-starter
- 90 Low riskopenalex-citation-chain-starter
- 90 Low riskquickgo-term-search
- 90 Low riskreactome-pathway-analysis-starter
- 90 Low riskreactome-pathway-hierarchy-walk-starter
- 90 Low riskquarto-notebook-report-starter