← All skills

clusterprofiler-custom-enrichment

95 / 100 · Low risk

Fine to try.

By ma-compbio-lab/SkillFoundry (GitHub) · data · 44 stars · scanned at commit 4a8cc0c

Use this skill to run deterministic local custom enrichment with Bioconductor clusterProfiler and user-supplied TERM2GENE tables. Do not use it for remote annotation downloads or organism database lookups.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'clusterprofiler-custom-enrichment' ] || [ -L ~/.agents/skills/'clusterprofiler-custom-enrichment' ]; then echo 'A skill folder named clusterprofiler-custom-enrichment already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ma-compbio-lab/SkillFoundry' "$d" && git -C "$d" checkout --quiet '4a8cc0cd9f923cde47a7f542d4a84b92bbabc59f' -- 'skills/systems-biology/clusterprofiler-custom-enrichment' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/systems-biology/clusterprofiler-custom-enrichment' ~/.agents/skills/'clusterprofiler-custom-enrichment' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'clusterprofiler-custom-enrichment' ~/.claude/skills/'clusterprofiler-custom-enrichment' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for ma-compbio-lab/SkillFoundry shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/ma-compbio-lab/SkillFoundry.svg)](https://zalavijaysinh.github.io/skilltrust/repos/ma-compbio-lab/SkillFoundry/)

Score history