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wdl-task-starter

95 / 100 · Low risk

Fine to try.

By ma-compbio-lab/SkillFoundry (GitHub) · productivity · 44 stars · scanned at commit 4a8cc0c

Use this skill to author and run a minimal WDL task and workflow with miniwdl. Do not use it for Cromwell-specific backends or large imported workflow graphs.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'wdl-task-starter' ] || [ -L ~/.agents/skills/'wdl-task-starter' ]; then echo 'A skill folder named wdl-task-starter already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ma-compbio-lab/SkillFoundry' "$d" && git -C "$d" checkout --quiet '4a8cc0cd9f923cde47a7f542d4a84b92bbabc59f' -- 'skills/reproducible-workflows/wdl-task-starter' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/reproducible-workflows/wdl-task-starter' ~/.agents/skills/'wdl-task-starter' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'wdl-task-starter' ~/.claude/skills/'wdl-task-starter' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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