← All skills

nf-core-pipeline-list

95 / 100 · Low risk

Fine to try.

By ma-compbio-lab/SkillFoundry (GitHub) · other · 44 stars · scanned at commit 4a8cc0c

Use this skill to verify the repo-managed nf-core tools install and retrieve a cleaned summary of available pipelines. Do not use it for interactive launch flows or full pipeline downloads.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'nf-core-pipeline-list' ] || [ -L ~/.agents/skills/'nf-core-pipeline-list' ]; then echo 'A skill folder named nf-core-pipeline-list already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ma-compbio-lab/SkillFoundry' "$d" && git -C "$d" checkout --quiet '4a8cc0cd9f923cde47a7f542d4a84b92bbabc59f' -- 'skills/reproducible-workflows/nf-core-pipeline-list' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/reproducible-workflows/nf-core-pipeline-list' ~/.agents/skills/'nf-core-pipeline-list' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'nf-core-pipeline-list' ~/.claude/skills/'nf-core-pipeline-list' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for ma-compbio-lab/SkillFoundry shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/ma-compbio-lab/SkillFoundry.svg)](https://zalavijaysinh.github.io/skilltrust/repos/ma-compbio-lab/SkillFoundry/)

Score history