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fgsea-preranked-enrichment

95 / 100 · Low risk

Fine to try.

By ma-compbio-lab/SkillFoundry (GitHub) · other · 44 stars · scanned at commit 4a8cc0c

Use this skill to run deterministic toy or local custom preranked gene-set enrichment with Bioconductor fgsea. Do not use it for remote annotation lookups or large cohort-scale pathway workflows.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'fgsea-preranked-enrichment' ] || [ -L ~/.agents/skills/'fgsea-preranked-enrichment' ]; then echo 'A skill folder named fgsea-preranked-enrichment already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ma-compbio-lab/SkillFoundry' "$d" && git -C "$d" checkout --quiet '4a8cc0cd9f923cde47a7f542d4a84b92bbabc59f' -- 'skills/systems-biology/fgsea-preranked-enrichment' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/systems-biology/fgsea-preranked-enrichment' ~/.agents/skills/'fgsea-preranked-enrichment' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'fgsea-preranked-enrichment' ~/.claude/skills/'fgsea-preranked-enrichment' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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