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protein-structure

77 / 100 · Review before installing

Check before installing. Some of what it can do is expected: a research skill usually looks things up on the internet.

By ssinder/bioinformatics-agent-skills (GitHub) · research · 75 stars · scanned at commit 42cf1a9

Analyzes protein structures from PDB files: parses ATOM/HETATM records with a dependency-free pure-Python parser, computes radius of gyration, gyration tensor and dipole moments, assigns secondary structure via DSSP or a built-in Kabsch-Sander hydrogen-bond implementation, and optionally retrieves UniProt metadata. This skill should be used when secondary structure assignment, Rg, shape analysis, DSSP, PDB parsing or protein structure annotation is requested.

Works with any agent that supports SKILL.md skills.

What this skill can do

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Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'protein-structure' ] || [ -L ~/.agents/skills/'protein-structure' ]; then echo 'A skill folder named protein-structure already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ssinder/bioinformatics-agent-skills' "$d" && git -C "$d" checkout --quiet '42cf1a9c2381b25047dae98ca944ee7b52781ed8' -- 'skills/protein-structure' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/protein-structure' ~/.agents/skills/'protein-structure' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'protein-structure' ~/.claude/skills/'protein-structure' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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