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bio-structural-biology-structure-io

80 / 100 · Low risk

Fine to try. Some of what it can do is expected: a research skill usually looks things up on the internet.

By lilinji/GeneTind-Life-Skills (GitHub) · research · 17 stars · scanned at commit 908229c

Reads, writes, downloads, and converts macromolecular structures with Biopython Bio.PDB. Use when choosing a format (mmCIF/PDBx vs legacy PDB vs BinaryCIF) for a structure that may exceed PDB's ~62-chain / 99,999-atom limits; when residue numbers do not match the paper because of auth_* vs label_* numbering (MMCIFParser defaults auth_residues=True); when metadata (resolution, method, R-free) is missing because Bio.PDB drops it and MMCIF2Dict is needed; when the deposited coordinates are the asy…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-structural-biology-structure-io' ] || [ -L ~/.agents/skills/'bio-structural-biology-structure-io' ]; then echo 'A skill folder named bio-structural-biology-structure-io already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-structural-biology-structure-io' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-structural-biology-structure-io' ~/.agents/skills/'bio-structural-biology-structure-io' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-structural-biology-structure-io' ~/.claude/skills/'bio-structural-biology-structure-io' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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