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spatial-transcriptomics-analysis
70 / 100 · Review before installing
Check before installing.
By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c
Works with any agent that supports SKILL.md skills.
What this skill can do
Can call paid AI services billed to you
The author does not mention this.
Found in 1 place.
Sends data to these websites: api.openai.com
The author does not mention this.
Found in 1 place.
Downloads and installs other software
The author does not mention this.
Found in 15 places.
Show 12 more
- skills/spatial-transcriptomics-analysis/bioSkills/spatial-communication/usage-guide.md, line 23
pip install squidpy scanpy pandas networkx matplotlib - skills/spatial-transcriptomics-analysis/bioSkills/spatial-data-io/usage-guide.md, line 23
pip install squidpy spatialdata spatialdata-io scanpy anndata - skills/spatial-transcriptomics-analysis/bioSkills/spatial-deconvolution/usage-guide.md, line 24
pip install cell2location - skills/spatial-transcriptomics-analysis/bioSkills/spatial-deconvolution/usage-guide.md, line 27
pip install tangram-sc - skills/spatial-transcriptomics-analysis/bioSkills/spatial-domains/usage-guide.md, line 23
pip install squidpy scanpy scikit-learn - skills/spatial-transcriptomics-analysis/bioSkills/spatial-multiomics/usage-guide.md, line 23
pip install squidpy spatialdata scanpy - skills/spatial-transcriptomics-analysis/bioSkills/spatial-neighbors/usage-guide.md, line 23
pip install squidpy scanpy - skills/spatial-transcriptomics-analysis/bioSkills/spatial-preprocessing/usage-guide.md, line 23
pip install squidpy scanpy matplotlib - skills/spatial-transcriptomics-analysis/bioSkills/spatial-proteomics/usage-guide.md, line 23
pip install scimap squidpy anndata scanpy - skills/spatial-transcriptomics-analysis/bioSkills/spatial-statistics/usage-guide.md, line 23
pip install squidpy scanpy pandas - skills/spatial-transcriptomics-analysis/bioSkills/spatial-visualization/usage-guide.md, line 23
pip install squidpy scanpy matplotlib - skills/spatial-transcriptomics-analysis/bioSkills/spatial-visualization/usage-guide.md, line 25
pip install napari
Safer alternatives
Low-risk skills in the same category (other) that look related. Check that one does what you need.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'spatial-transcriptomics-analysis' ] || [ -L ~/.agents/skills/'spatial-transcriptomics-analysis' ]; then echo 'A skill folder named spatial-transcriptomics-analysis already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/spatial-transcriptomics-analysis' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/spatial-transcriptomics-analysis' ~/.agents/skills/'spatial-transcriptomics-analysis' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'spatial-transcriptomics-analysis' ~/.claude/skills/'spatial-transcriptomics-analysis' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for lilinji/GeneTind-Life-Skills shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/lilinji/GeneTind-Life-Skills/)
Score history
| Date | Version | Score |
|---|
| 2026-11-11 | 908229c | 70 |