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Spatial Transcriptomics Visium Analysis
80 / 100 · Low risk
Fine to try.
By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1
Works with any agent that supports SKILL.md skills.
What this skill can do
Downloads and installs other software
The author does not mention this.
Found in 14 places.
Show 11 more
- Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 33
| anndata | ≥0.8 | BSD-3-Clause | ✅ Permitted | `pip install anndata` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 34
| plotnine | ≥0.12 | MIT | ✅ Permitted | `pip install plotnine` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 35
| plotnine-prism | ≥0.2 | MIT | ✅ Permitted | `pip install plotnine-prism` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 36
| seaborn | ≥0.11 | BSD-3-Clause | ✅ Permitted | `pip install seaborn` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 37
| matplotlib | ≥3.5 | PSF | ✅ Permitted | `pip install matplotlib` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 38
| scikit-learn | ≥1.0 | BSD-3-Clause | ✅ Permitted | `pip install scikit-learn` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 39
| scikit-misc | ≥0.1 | BSD-3-Clause | ✅ Permitted | `pip install scikit-misc` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 40
| numpy | ≥1.21 | BSD-3-Clause | ✅ Permitted | `pip install numpy` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 41
| pandas | ≥1.3 | BSD-3-Clause | ✅ Permitted | `pip install pandas` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 185
| **`ModuleNotFoundError: squidpy`** | Missing package | `pip install squidpy` | - Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics/SKILL.md, line 186
| **`ModuleNotFoundError: plotnine_prism`** | Missing theme package | `pip install plotnine-prism` |
Runs commands on your computer
The author does not mention this.
Found in 1 place.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'spatial-transcriptomics-visium-analysis' ] || [ -L ~/.agents/skills/'spatial-transcriptomics-visium-analysis' ]; then echo 'A skill folder named spatial-transcriptomics-visium-analysis already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/External_Collections/OmicsClaw/knowledge_base/spatial-transcriptomics' ~/.agents/skills/'spatial-transcriptomics-visium-analysis' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'spatial-transcriptomics-visium-analysis' ~/.claude/skills/'spatial-transcriptomics-visium-analysis' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/)
Score history
| Date | Version | Score |
|---|
| 2026-11-13 | fde6cd1 | 80 |
| 2026-11-07 | 839c35a | 80 |
Also found in
Identical copies of this skill exist at:
- BioTender-max/awesome-bio-agent-skills/skills/omicsclaw/spatial-transcriptomics
- mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/Skills/Knowledge_Base/spatial-transcriptomics