← All skills

bio-workflows-liquid-biopsy-pipeline

75 / 100 · Review before installing

Check before installing. Some of what it can do is expected: a data skill usually connects to databases or online services with your credentials.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Orchestrates the cell-free DNA / liquid-biopsy pipeline from plasma sequencing to tumor monitoring, forking tumor-naive (screening) vs tumor-informed (MRD), and chaining pre-analytic QC, UMI/duplex error-suppression (fgbio), fragment QC, ichorCNA tumor fraction (sWGS) or VarDict low-VAF calling (panel), CHIP subtraction against matched WBC, optional fragmentomics/methylation, and longitudinal tracking. Use when treating pre-analytics as the irreversible sensitivity ceiling (tube/time-to-plasma/…

Works with any agent that supports SKILL.md skills.

What this skill can do

Safer alternatives

Low-risk skills in the same category (data) that look related. Check that one does what you need.

• 95 Low riskLiquid_Biopsy_Analytics_Agentmdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- · 36 stars
• 80 Low riskbio-methylation-callingdiegosouzapw/awesome-omni-skill · 66 stars
• 80 Low riskbio-atac-seq-atac-peak-callingdiegosouzapw/awesome-omni-skill · 66 stars

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-workflows-liquid-biopsy-pipeline' ] || [ -L ~/.agents/skills/'bio-workflows-liquid-biopsy-pipeline' ]; then echo 'A skill folder named bio-workflows-liquid-biopsy-pipeline already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-workflows-liquid-biopsy-pipeline' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-workflows-liquid-biopsy-pipeline' ~/.agents/skills/'bio-workflows-liquid-biopsy-pipeline' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-workflows-liquid-biopsy-pipeline' ~/.claude/skills/'bio-workflows-liquid-biopsy-pipeline' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for lilinji/GeneTind-Life-Skills shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/lilinji/GeneTind-Life-Skills.svg)](https://zalavijaysinh.github.io/skilltrust/repos/lilinji/GeneTind-Life-Skills/)

Score history