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bio-rna-quantification-featurecounts-counting

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By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Count reads per gene from aligned BAM files using Subread featureCounts. Use when turning STAR/HISAT2 BAMs into a gene-level count matrix for DESeq2/edgeR, deciding library strandedness, handling paired-end fragment counting, choosing how to treat multi-mapping and multi-overlapping reads, or diagnosing a low assignment rate from the summary file.

Works with any agent that supports SKILL.md skills.

What this skill can do

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Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-rna-quantification-featurecounts-counting' ] || [ -L ~/.agents/skills/'bio-rna-quantification-featurecounts-counting' ]; then echo 'A skill folder named bio-rna-quantification-featurecounts-counting already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-rna-quantification-featurecounts-counting' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-rna-quantification-featurecounts-counting' ~/.agents/skills/'bio-rna-quantification-featurecounts-counting' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-rna-quantification-featurecounts-counting' ~/.claude/skills/'bio-rna-quantification-featurecounts-counting' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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