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bio-alignment-filtering

80 / 100 · Low risk

Fine to try.

By diegosouzapw/awesome-omni-skill (GitHub) · other · 66 stars · scanned at commit a6b3c30

Filter alignments by flags, mapping quality, and regions using samtools view and pysam. Use when extracting specific reads, removing low-quality alignments, or subsetting to target regions.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-alignment-filtering' ] || [ -L ~/.agents/skills/'bio-alignment-filtering' ]; then echo 'A skill folder named bio-alignment-filtering already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/diegosouzapw/awesome-omni-skill' "$d" && git -C "$d" checkout --quiet 'a6b3c3005cedf056a48b084671c6282426d6e9fc' -- 'skills/fullstack-web/bio-alignment-filtering' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/fullstack-web/bio-alignment-filtering' ~/.agents/skills/'bio-alignment-filtering' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-alignment-filtering' ~/.claude/skills/'bio-alignment-filtering' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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