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sc-pathway-scoring

97 / 100 · Low risk

Fine to try.

By TianGzlab/OmicsClaw (GitHub) · other · 161 stars · scanned at commit 90a3bec

Load when computing per-cell pathway / gene-set scores on a normalised scRNA AnnData via

Works with any agent that supports SKILL.md skills.

Partially scanned — some files couldn't be read; we'll retry on the next scan

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'sc-pathway-scoring' ] || [ -L ~/.agents/skills/'sc-pathway-scoring' ]; then echo 'A skill folder named sc-pathway-scoring already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/TianGzlab/OmicsClaw' "$d" && git -C "$d" checkout --quiet '90a3bec3e6549bc33dddbf67e4b23869736c49d1' -- 'skills/singlecell/scrna/sc-pathway-scoring' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/singlecell/scrna/sc-pathway-scoring' ~/.agents/skills/'sc-pathway-scoring' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'sc-pathway-scoring' ~/.claude/skills/'sc-pathway-scoring' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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