bulkrna-ppi-network

92 / 100 · Low risk

Fine to try.

By TianGzlab/OmicsClaw (GitHub) · other · 161 stars · scanned at commit 90a3bec

Load when querying STRING for the protein-protein interaction neighborhood of a bulk

Works with any agent that supports SKILL.md skills.

What this skill can do

Runs commands on your computer

The author does not mention this.

Found in 2 places.

skills/bulkrna/bulkrna-ppi-network/SKILL.md, line 108python skills/bulkrna/bulkrna-ppi-network/bulkrna_ppi_network.py --demo --output /tmp/bulkrna_ppi_network
skills/bulkrna/bulkrna-ppi-network/tests/test_cli.py, line 11result = subprocess.run([sys.executable, str(SCRIPT), '--demo', '--species', '10090', '--output', str(tmp_path)], capture_output=True, text=True)

Sends data to these websites: string-db.org

This is disclosed by the author in the skill's SKILL.md or README.

Found in 1 place.

skills/bulkrna/bulkrna-ppi-network/_api.py, line 59response = requests.get('https://string-db.org/api/tsv/network', params={

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bulkrna-ppi-network' ] || [ -L ~/.agents/skills/'bulkrna-ppi-network' ]; then echo 'A skill folder named bulkrna-ppi-network already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/TianGzlab/OmicsClaw' "$d" && git -C "$d" checkout --quiet '90a3bec3e6549bc33dddbf67e4b23869736c49d1' -- 'skills/bulkrna/bulkrna-ppi-network' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bulkrna/bulkrna-ppi-network' ~/.agents/skills/'bulkrna-ppi-network' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bulkrna-ppi-network' ~/.claude/skills/'bulkrna-ppi-network' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Date	Version	Score
2026-11-08	`90a3bec`	92