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scirpy-immune-repertoire

100 / 100 · Low risk

Fine to try.

By stanfish06/skillquarium (GitHub) · data · 12 stars · scanned at commit ced6c96

Single-cell immune receptor analysis with Scirpy for scanpy, anndata, and scvi-tools projects. Use for TCR/BCR V(D)J import, clonotype definition, clonal expansion, repertoire overlap, immune receptor QC, MuData/AnnData integration, and Scanpy-linked immune repertoire visualization.

Works with any agent that supports SKILL.md skills.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'scirpy-immune-repertoire' ] || [ -L ~/.agents/skills/'scirpy-immune-repertoire' ]; then echo 'A skill folder named scirpy-immune-repertoire already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/stanfish06/skillquarium' "$d" && git -C "$d" checkout --quiet 'ced6c96bd67acccbf0280a5071e59a523c118c66' -- 'skills/scirpy-immune-repertoire' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/scirpy-immune-repertoire' ~/.agents/skills/'scirpy-immune-repertoire' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'scirpy-immune-repertoire' ~/.claude/skills/'scirpy-immune-repertoire' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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