← All skills

molecular-docking

80 / 100 · Low risk

Fine to try.

By stanfish06/skillquarium (GitHub) · other · 12 stars · scanned at commit f748ea9

Use when running classical protein-ligand docking with AutoDock Vina, smina, or GNINA, including receptor or ligand preparation, search-box setup, docking, pose analysis, virtual screening, affinity scoring, or GNINA rescoring of DiffDock poses. Trigger terms include docking, PDBQT, binding pose, and protein-ligand.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'molecular-docking' ] || [ -L ~/.agents/skills/'molecular-docking' ]; then echo 'A skill folder named molecular-docking already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/stanfish06/skillquarium' "$d" && git -C "$d" checkout --quiet 'f748ea91aa51ce8fc42c27c809dba73a8377b1d5' -- 'skills/molecular-docking' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/molecular-docking' ~/.agents/skills/'molecular-docking' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'molecular-docking' ~/.claude/skills/'molecular-docking' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for stanfish06/skillquarium shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/stanfish06/skillquarium.svg)](https://zalavijaysinh.github.io/skilltrust/repos/stanfish06/skillquarium/)

Score history