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ld-1000g-region-compute

75 / 100 · Review before installing

Check before installing.

By stanfish06/skillquarium (GitHub) · other · 12 stars · scanned at commit ced6c96

Compute pairwise r² between a lead variant and every variant in a window using the 1000 Genomes Phase 3 GRCh38 reference panel, ancestry-stratified. Use when an agent needs LD coloring for a regional plot or LD pruning around a candidate causal variant. Single client (on-demand region fetch from EBI 1000G FTP); no multi-GB cold-start.

Works with any agent that supports SKILL.md skills.

What this skill can do

Safer alternatives

Low-risk skills in the same category (other) that look related. Check that one does what you need.

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Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'ld-1000g-region-compute' ] || [ -L ~/.agents/skills/'ld-1000g-region-compute' ]; then echo 'A skill folder named ld-1000g-region-compute already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/stanfish06/skillquarium' "$d" && git -C "$d" checkout --quiet 'ced6c96bd67acccbf0280a5071e59a523c118c66' -- 'skills/ld-1000g-region-compute' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/ld-1000g-region-compute' ~/.agents/skills/'ld-1000g-region-compute' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'ld-1000g-region-compute' ~/.claude/skills/'ld-1000g-region-compute' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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