← All skills

conda-bioconda

75 / 100 · Review before installing

Check before installing. Some of what it can do is expected: a coding skill usually runs build and test commands.

By stanfish06/skillquarium (GitHub) · coding · 12 stars · scanned at commit ced6c96

Reproducible Conda/Mamba/micromamba environment management for bioinformatics, with correct Bioconda channel setup, environment files, version pinning, and lockfiles. Use when installing bioinformatics tools (samtools, bwa, GATK, STAR, etc.), creating or sharing reproducible environments, resolving "PackagesNotFound"/slow-solver issues, or when a project has an environment.yml. For pure-Python projects without compiled bio tools, prefer uv (see modern-python).

Works with any agent that supports SKILL.md skills.

What this skill can do

Safer alternatives

Low-risk skills in the same category (coding) that look related. Check that one does what you need.

• 82 Low riskconda-env-setupdiegosouzapw/awesome-omni-skill · 66 stars
• 100 Low riskdebug-condaai4nucleome/BioMaster · 118 stars
• 100 Low riskholoscan-install-condaNVIDIA/skills · 3,933 stars

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'conda-bioconda' ] || [ -L ~/.agents/skills/'conda-bioconda' ]; then echo 'A skill folder named conda-bioconda already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/stanfish06/skillquarium' "$d" && git -C "$d" checkout --quiet 'ced6c96bd67acccbf0280a5071e59a523c118c66' -- 'skills/conda-bioconda' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/conda-bioconda' ~/.agents/skills/'conda-bioconda' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'conda-bioconda' ~/.claude/skills/'conda-bioconda' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for stanfish06/skillquarium shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/stanfish06/skillquarium.svg)](https://zalavijaysinh.github.io/skilltrust/repos/stanfish06/skillquarium/)

Score history