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cell-communication

80 / 100 · Low risk

Fine to try.

By stanfish06/skillquarium (GitHub) · data · 12 stars · scanned at commit f748ea9

Cell-cell / ligand-receptor communication analysis for single-cell data using LIANA+ (recommended consensus default), CellPhoneDB, CellChat (R), and squidpy's ligrec. Use for inferring cell-cell communication, ligand-receptor pairs, source->target signaling from an annotated .h5ad. Trigger terms - "cell-cell communication", "ligand-receptor", "CellPhoneDB", "CellChat", "LIANA", "cell interaction", "ligrec".

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'cell-communication' ] || [ -L ~/.agents/skills/'cell-communication' ]; then echo 'A skill folder named cell-communication already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/stanfish06/skillquarium' "$d" && git -C "$d" checkout --quiet 'f748ea91aa51ce8fc42c27c809dba73a8377b1d5' -- 'skills/cell-communication' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/cell-communication' ~/.agents/skills/'cell-communication' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'cell-communication' ~/.claude/skills/'cell-communication' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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