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single-cell-rnaseq

80 / 100 · Low risk

Fine to try.

By ssinder/bioinformatics-agent-skills (GitHub) · research · 75 stars · scanned at commit 42cf1a9

This skill should be used when running single-cell RNA-seq analysis: reading 10x/AnnData matrices, QC filtering, normalization, HVG selection, PCA, clustering, UMAP/t-SNE and cell type annotation. 用于单细胞转录组（scRNA-seq）质控、降维、聚类与细胞注释全流程。

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'single-cell-rnaseq' ] || [ -L ~/.agents/skills/'single-cell-rnaseq' ]; then echo 'A skill folder named single-cell-rnaseq already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ssinder/bioinformatics-agent-skills' "$d" && git -C "$d" checkout --quiet '42cf1a9c2381b25047dae98ca944ee7b52781ed8' -- 'skills/single-cell-rnaseq' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/single-cell-rnaseq' ~/.agents/skills/'single-cell-rnaseq' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'single-cell-rnaseq' ~/.claude/skills/'single-cell-rnaseq' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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