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pymol-structure-visualization

95 / 100 · Low risk

Fine to try.

By ssinder/bioinformatics-agent-skills (GitHub) · research · 75 stars · scanned at commit 42cf1a9

This skill should be used when analyzing inter-chain contacts in protein structures — computing residue-level contact geometry from PDB files with a uniform-grid spatial index, classifying each contact into hydrogen bonds, salt bridges, hydrophobic contacts, pi-pi stacking and cation-pi interactions using residue chemistry, identifying hotspot residues, and exporting CSV/JSON results together with Mermaid interaction networks and ready-to-run PyMOL visualization scripts. 用于 PDB 链间残基接触分析、结合界面热点残…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'pymol-structure-visualization' ] || [ -L ~/.agents/skills/'pymol-structure-visualization' ]; then echo 'A skill folder named pymol-structure-visualization already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ssinder/bioinformatics-agent-skills' "$d" && git -C "$d" checkout --quiet '42cf1a9c2381b25047dae98ca944ee7b52781ed8' -- 'skills/pymol-structure-visualization' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/pymol-structure-visualization' ~/.agents/skills/'pymol-structure-visualization' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'pymol-structure-visualization' ~/.claude/skills/'pymol-structure-visualization' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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