← All skills

protein-interactions

80 / 100 · Low risk

Fine to try.

By ssinder/bioinformatics-agent-skills (GitHub) · research · 75 stars · scanned at commit 42cf1a9

Analyzes protein-ligand and protein-protein interactions from PLIP XML reports and AlphaFold model packages using a self-contained standard-library XML parser: extracts residue-level salt bridges, hydrogen bonds, hydrophobic, pi-stacking, water bridges, halogen bonds and metal complexes, ranks hotspot residues, and emits Mermaid network graphs plus PyMOL annotation scripts. This skill should be used when interaction detection, hotspot ranking, PLIP report parsing, interaction network visualisat…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'protein-interactions' ] || [ -L ~/.agents/skills/'protein-interactions' ]; then echo 'A skill folder named protein-interactions already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ssinder/bioinformatics-agent-skills' "$d" && git -C "$d" checkout --quiet '42cf1a9c2381b25047dae98ca944ee7b52781ed8' -- 'skills/protein-interactions' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/protein-interactions' ~/.agents/skills/'protein-interactions' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'protein-interactions' ~/.claude/skills/'protein-interactions' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for ssinder/bioinformatics-agent-skills shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/ssinder/bioinformatics-agent-skills.svg)](https://zalavijaysinh.github.io/skilltrust/repos/ssinder/bioinformatics-agent-skills/)

Score history