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protein-docking-hdock

94 / 100 · Low risk

Fine to try. Some of what it can do is expected: a research skill usually looks things up on the internet.

By ssinder/bioinformatics-agent-skills (GitHub) · research · 75 stars · scanned at commit 42cf1a9

Submits protein-protein docking jobs to the HDOCK server and retrieves the resulting Docking Score, Confidence Score, ligand RMSD and ranked complex models. Uses plain HTTP form submission against the HDOCK server rather than browser automation, supports PDB files, PDB ID:ChainID references and FASTA sequences for both receptor and ligand, records submitted jobs to a CSV so results can be collected later, and can poll for completion. This skill should be used when running protein-protein comple…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'protein-docking-hdock' ] || [ -L ~/.agents/skills/'protein-docking-hdock' ]; then echo 'A skill folder named protein-docking-hdock already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ssinder/bioinformatics-agent-skills' "$d" && git -C "$d" checkout --quiet '42cf1a9c2381b25047dae98ca944ee7b52781ed8' -- 'skills/protein-docking-hdock' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/protein-docking-hdock' ~/.agents/skills/'protein-docking-hdock' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'protein-docking-hdock' ~/.claude/skills/'protein-docking-hdock' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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