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paper-fulltext-extract

75 / 100 · Review before installing

Check before installing. Some of what it can do is expected: a research skill usually looks things up on the internet.

By ssinder/bioinformatics-agent-skills (GitHub) · research · 75 stars · scanned at commit 42cf1a9

This skill should be used when extracting structured full text from scientific PDF papers — converting PDFs to TEI XML via a local GROBID service, parsing titles, authors, abstracts, keywords, section trees, figures and references into JSON, Markdown or HTML, building a searchable corpus index across many papers, and pulling the first sentences of each Introduction paragraph for rapid paper triage. 用于科研 PDF 全文结构化抽取、TEI 解析、文献语料全文检索与引言精读的场景。

Works with any agent that supports SKILL.md skills.

What this skill can do

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Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'paper-fulltext-extract' ] || [ -L ~/.agents/skills/'paper-fulltext-extract' ]; then echo 'A skill folder named paper-fulltext-extract already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ssinder/bioinformatics-agent-skills' "$d" && git -C "$d" checkout --quiet '42cf1a9c2381b25047dae98ca944ee7b52781ed8' -- 'skills/paper-fulltext-extract' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/paper-fulltext-extract' ~/.agents/skills/'paper-fulltext-extract' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'paper-fulltext-extract' ~/.claude/skills/'paper-fulltext-extract' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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