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ml-peptide-generation

80 / 100 · Low risk

Fine to try.

By ssinder/bioinformatics-agent-skills (GitHub) · research · 75 stars · scanned at commit 42cf1a9

Generates candidate binder peptides for a target protein using the PepMLM-650M masked language model — appends <mask> tokens to the target sequence and samples amino acids at each position, with illegal residues (X, B, Z) excluded from the sampling candidates. Reports pseudo-perplexity for each candidate, supports reproducible generation via an explicit random seed, and provides offline filtering and parameter-sweep analysis that needs no GPU. This skill should be used when designing peptides o…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'ml-peptide-generation' ] || [ -L ~/.agents/skills/'ml-peptide-generation' ]; then echo 'A skill folder named ml-peptide-generation already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ssinder/bioinformatics-agent-skills' "$d" && git -C "$d" checkout --quiet '42cf1a9c2381b25047dae98ca944ee7b52781ed8' -- 'skills/ml-peptide-generation' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/ml-peptide-generation' ~/.agents/skills/'ml-peptide-generation' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'ml-peptide-generation' ~/.claude/skills/'ml-peptide-generation' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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