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alphafold-db

77 / 100 · Review before installing

Check before installing. Some of what it can do is expected: a coding skill usually runs build and test commands.

By ssinder/bioinformatics-agent-skills (GitHub) · coding · 75 stars · scanned at commit 42cf1a9

Downloads predicted protein structures from the EBI AlphaFold Database API and exports per-protein prediction metadata. Resolves the current PDB/CIF download URL from the API instead of hard-coding a model version, supports batch accession lists, resumable downloads, pLDDT-based quality filtering before spending bandwidth, and validates response content types so HTML error pages are never mistaken for structure files. This skill should be used when fetching AlphaFold models, retrieving predicte…

Works with any agent that supports SKILL.md skills.

What this skill can do

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Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'alphafold-db' ] || [ -L ~/.agents/skills/'alphafold-db' ]; then echo 'A skill folder named alphafold-db already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ssinder/bioinformatics-agent-skills' "$d" && git -C "$d" checkout --quiet '42cf1a9c2381b25047dae98ca944ee7b52781ed8' -- 'skills/alphafold-db' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/alphafold-db' ~/.agents/skills/'alphafold-db' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'alphafold-db' ~/.claude/skills/'alphafold-db' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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