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bioqc-mcp

82 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By skillmds/skillmd (GitHub) · coding · 143 stars · scanned at commit 4467dd0

Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation. Exposes an MCP stdio server for live AI integration alongside a ClawBio CLI runner.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bioqc-mcp' ] || [ -L ~/.agents/skills/'bioqc-mcp' ]; then echo 'A skill folder named bioqc-mcp already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/skillmds/skillmd' "$d" && git -C "$d" checkout --quiet '4467dd0debe8f189ba78142ee57ec42aea84e623' -- 'plugins/agents-mcp/skills/bioqc-mcp' && mkdir -p ~/.agents/skills && cp -R "$d"/'plugins/agents-mcp/skills/bioqc-mcp' ~/.agents/skills/'bioqc-mcp' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bioqc-mcp' ~/.claude/skills/'bioqc-mcp' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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