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scanpy

95 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By sickn33/agentic-awesome-skills (GitHub) · coding · 49,524 stars · scanned at commit 00f9c40

Scanpy is a scalable Python toolkit for analyzing single-cell RNA-seq data, built on AnnData. Apply this skill for complete single-cell workflows including quality control, normalization, dimensionality reduction, clustering, marker gene identification, visualization, and trajectory analysis.

Works with any agent that supports SKILL.md skills.

What this skill can do

Other copies in this repository

sickn33/agentic-awesome-skills has 2 more folders with a skill named scanpy. This page shows the lowest-scoring copy.

• plugins/agentic-awesome-skills/skills/scanpy 95/100 · Low risk
• plugins/agentic-awesome-skills-claude/skills/scanpy 95/100 · Low risk

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'scanpy' ] || [ -L ~/.agents/skills/'scanpy' ]; then echo 'A skill folder named scanpy already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/sickn33/agentic-awesome-skills' "$d" && git -C "$d" checkout --quiet '00f9c4077878be6ffcc093c099f05a6cccaf1b95' -- 'skills/scanpy' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/scanpy' ~/.agents/skills/'scanpy' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'scanpy' ~/.claude/skills/'scanpy' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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