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reactome-database
95 / 100 · Low risk
Fine to try.
By sharkrebel/everything-everywhere-for-antigravity (GitHub) · data · 89 stars · scanned at commit 71bf78c
Query the Reactome database (Analysis and Content Services). Use when the user asks about pathway analysis, gene list enrichment, retrieving results by token, finding unmapped or not-found identifiers, mapping identifiers, reaction participants (inputs, outputs), pathway hierarchy (including top-level pathways), diagram export, cross-reference mapping, or searching the knowledgebase.
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 16 places.
Show 13 more
- skills/reactome_database/SKILL.md, line 138
uv run scripts/reactome_analysis.py identifier --id TP53 --output /tmp/tp53.json - skills/reactome_database/SKILL.md, line 147
uv run scripts/reactome_analysis.py analyze --data "TP53,BRCA1,EGFR" --output /tmp/enrich.json - skills/reactome_database/SKILL.md, line 159
uv run scripts/reactome_analysis.py token-result --token TOKEN --output /tmp/result.json - skills/reactome_database/SKILL.md, line 170
uv run scripts/reactome_analysis.py download-result --token TOKEN --output /tmp/full.json - skills/reactome_database/SKILL.md, line 179
uv run scripts/reactome_analysis.py mapping --data "TP53,BRCA1" --output /tmp/mapped.json - skills/reactome_database/SKILL.md, line 188
uv run scripts/reactome_analysis.py participants --id R-HSA-6804194 --output /tmp/participants.json - skills/reactome_database/SKILL.md, line 197
uv run scripts/reactome_analysis.py component-of --id R-HSA-69488 --output /tmp/complexes.json - skills/reactome_database/SKILL.md, line 205
uv run scripts/reactome_analysis.py event-ancestors --id R-HSA-69278 --output /tmp/ancestors.json - skills/reactome_database/SKILL.md, line 216
uv run scripts/reactome_analysis.py diagram --id R-HSA-69278 --output /tmp/diagram.png - skills/reactome_database/SKILL.md, line 227
uv run scripts/reactome_analysis.py xref-mapping --id TP53 --output /tmp/xref.json - skills/reactome_database/SKILL.md, line 234
uv run scripts/reactome_analysis.py search --query "TP53 apoptosis" --output /tmp/results.json - skills/reactome_database/SKILL.md, line 240
uv run scripts/reactome_analysis.py query --id R-HSA-69278 --output /tmp/entry.json - skills/reactome_database/SKILL.md, line 246
uv run scripts/reactome_analysis.py report --token TOKEN --output /tmp/report.pdf
Other copies in this repository
sharkrebel/everything-everywhere-for-antigravity has 1 more folder with a skill named reactome-database. This page shows the lowest-scoring copy.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'reactome-database' ] || [ -L ~/.agents/skills/'reactome-database' ]; then echo 'A skill folder named reactome-database already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/sharkrebel/everything-everywhere-for-antigravity' "$d" && git -C "$d" checkout --quiet '71bf78cfb929edcf8972b707085c40cc0cf23bae' -- 'skills/reactome_database' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/reactome_database' ~/.agents/skills/'reactome-database' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'reactome-database' ~/.claude/skills/'reactome-database' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for sharkrebel/everything-everywhere-for-antigravity shows the score of its lowest-scoring skill.
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Score history
| Date | Version | Score |
|---|
| 2026-11-11 | 71bf78c | 95 |