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tamarind
79 / 100 · Review before installing
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By sharkrebel/everything-everywhere-for-antigravity (GitHub) · design · 89 stars · scanned at commit 71bf78c
Access a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required. Tamarind bundles popular open-source models for structure prediction (AlphaFold, Boltz, Chai, ESMFold), protein, binder, and de novo design (RFdiffusion, ProteinMPNN, BoltzGen), antibody and nanobody design and developability, protein-ligand docking (DiffDock, Autodock Vina), binding-affinity prediction, MSA generation, and molec…
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
This is disclosed by the author in the skill's SKILL.md or README.
Found in 1 place.
Sends data to these websites: app.tamarind.bio
This is disclosed by the author in the skill's SKILL.md or README.
Found in 33 places.
Show 17 more
- plugins/scientific-agent-skills/skills/tamarind/SKILL.md, line 128
job = requests.get(f"{BASE}/jobs", headers=HEADERS, - plugins/scientific-agent-skills/skills/tamarind/SKILL.md, line 136
url = requests.post(f"{BASE}/result", headers=HEADERS, - plugins/scientific-agent-skills/skills/tamarind/SKILL.md, line 138
open("my-alphafold-run.zip", "wb").write(requests.get(url).content) - plugins/scientific-agent-skills/skills/tamarind/SKILL.md, line 150
tools = requests.get(f"{BASE}/tools", headers=HEADERS).json() # a list - plugins/scientific-agent-skills/skills/tamarind/SKILL.md, line 193
1. **Upload first, then reference by bare filename.** `PUT /upload/{filename}`, or MCP `uploadFile` → presigned URL → `curl -X PUT -T file "<url>"`. If your hos - plugins/scientific-agent-skills/skills/tamarind/SKILL.md, line 221
requests.post(f"{BASE}/submit-batch", headers=HEADERS, json={ - plugins/scientific-agent-skills/skills/tamarind/SKILL.md, line 237
parent = requests.get(f"{BASE}/jobs", headers=HEADERS, - plugins/scientific-agent-skills/skills/tamarind/SKILL.md, line 247
open("batch.zip", "wb").write(requests.get(parent["resultUrl"]).content) - plugins/scientific-agent-skills/skills/tamarind/references/api_reference.md, line 106
url = requests.post(f"{BASE}/result", headers=H, json={"jobName": "myJob"}).text.strip('"') - plugins/scientific-agent-skills/skills/tamarind/references/api_reference.md, line 107
open("myJob.zip", "wb").write(requests.get(url).content) - plugins/scientific-agent-skills/skills/tamarind/references/examples.md, line 34
tools = requests.get(f"{BASE}/tools", headers=HEADERS).json() - plugins/scientific-agent-skills/skills/tamarind/references/tool_catalog.md, line 10
tools = requests.get(f"{BASE}/tools", headers=HEADERS).json() # a list - plugins/scientific-agent-skills/skills/tamarind/references/workflows.md, line 17
tools = requests.get(f"{BASE}/tools", headers=HEADERS).json() - plugins/scientific-agent-skills/skills/tamarind/references/workflows.md, line 30
requests.post(f"{BASE}/submit-job", headers=HEADERS, json=job).raise_for_status() - plugins/scientific-agent-skills/skills/tamarind/references/workflows.md, line 34
row = requests.get(f"{BASE}/jobs", headers=HEADERS, - plugins/scientific-agent-skills/skills/tamarind/references/workflows.md, line 44
url = requests.post(f"{BASE}/result", headers=HEADERS, - plugins/scientific-agent-skills/skills/tamarind/references/workflows.md, line 46
open("ubiquitin-fold.zip", "wb").write(requests.get(url).content)
and 13 more places
Downloads and installs other software
The author does not mention this.
Found in 1 place.
Safer alternatives
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Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'tamarind' ] || [ -L ~/.agents/skills/'tamarind' ]; then echo 'A skill folder named tamarind already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/sharkrebel/everything-everywhere-for-antigravity' "$d" && git -C "$d" checkout --quiet '71bf78cfb929edcf8972b707085c40cc0cf23bae' -- 'plugins/scientific-agent-skills/skills/tamarind' && mkdir -p ~/.agents/skills && cp -R "$d"/'plugins/scientific-agent-skills/skills/tamarind' ~/.agents/skills/'tamarind' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'tamarind' ~/.claude/skills/'tamarind' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for sharkrebel/everything-everywhere-for-antigravity shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/sharkrebel/everything-everywhere-for-antigravity/)
Score history
| Date | Version | Score |
|---|
| 2026-11-11 | 71bf78c | 79 |