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visualize

94 / 100 · Low risk

Fine to try.

By RosettaCommons/chaperone (GitHub) · other · 170 stars · scanned at commit 2d3ac1e

Visualize structures (CIF, PDB, pkl) in PyMOL via its XML-RPC server. Use when the user says 'visualize', 'show structure', 'view in pymol', 'viz', 'show cartoon', 'color this', or wants to send a structure or PyMOL commands to their PyMOL session.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'visualize' ] || [ -L ~/.agents/skills/'visualize' ]; then echo 'A skill folder named visualize already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/RosettaCommons/chaperone' "$d" && git -C "$d" checkout --quiet '2d3ac1e7ce8078e7b99ce1511940fda61c7198ae' -- '.agents/skills/visualize' && mkdir -p ~/.agents/skills && cp -R "$d"/'.agents/skills/visualize' ~/.agents/skills/'visualize' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'visualize' ~/.claude/skills/'visualize' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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