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debugging-inputs

95 / 100 · Low risk

Fine to try.

By RosettaCommons/chaperone (GitHub) · other · 170 stars · scanned at commit 2d3ac1e

Troubleshoot common input preparation issues across pipeline blocks — chain ID mismatches, ligand numbering, residue ID conflicts, and structure parsing failures. Use when users report RMSD errors, AF3 input mismatches, or unexpected chain assignments.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'debugging-inputs' ] || [ -L ~/.agents/skills/'debugging-inputs' ]; then echo 'A skill folder named debugging-inputs already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/RosettaCommons/chaperone' "$d" && git -C "$d" checkout --quiet '2d3ac1e7ce8078e7b99ce1511940fda61c7198ae' -- '.agents/skills/debugging-inputs' && mkdir -p ~/.agents/skills && cp -R "$d"/'.agents/skills/debugging-inputs' ~/.agents/skills/'debugging-inputs' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'debugging-inputs' ~/.claude/skills/'debugging-inputs' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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