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alterlab-monarch

95 / 100 · Low risk

Fine to try. Some of what it can do is expected: a research skill usually looks things up on the internet.

By roohe/agentic-super-skills (GitHub) · research · 10 stars · scanned at commit f483e54

Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use for rare disease gene discovery, phenotype-to-gene mapping, cross-species disease modeling, and HPO term lookup. Part of the AlterLab Academic Skills suite.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'alterlab-monarch' ] || [ -L ~/.agents/skills/'alterlab-monarch' ]; then echo 'A skill folder named alterlab-monarch already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/roohe/agentic-super-skills' "$d" && git -C "$d" checkout --quiet 'f483e54f3ad5f202a77d45f2e57f8d970b71195f' -- 'skills_library/alterlab-monarch' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills_library/alterlab-monarch' ~/.agents/skills/'alterlab-monarch' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'alterlab-monarch' ~/.claude/skills/'alterlab-monarch' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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