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reactome-database
75 / 100 · Review before installing
Check before installing. Some of what it can do is expected: a coding skill usually runs build and test commands.
By plurigrid/asi (GitHub) · coding · 72 stars · scanned at commit 293ce9f
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
Works with any agent that supports SKILL.md skills.
What this skill can do
Downloads and installs other software
The author does not mention this.
Found in 1 place.
Runs commands on your computer
The author does not mention this. Expected for a coding skill.
Found in 2 places.
Sends data to these websites: reactome.org
The author does not mention this.
Found in 23 places.
Show 17 more
- skills/reactome-database/SKILL.md, line 127
response = requests.post( - skills/reactome-database/SKILL.md, line 144
response = requests.get(f"https://reactome.org/AnalysisService/token/{token}") - skills/reactome-database/SKILL.md, line 168
response = requests.post( - skills/reactome-database/SKILL.md, line 182
response = requests.post( - skills/reactome-database/references/api_reference.md, line 26
response = requests.get("https://reactome.org/ContentService/data/database/version") - skills/reactome-database/references/api_reference.md, line 57
response = requests.get("https://reactome.org/ContentService/data/query/R-HSA-69278") - skills/reactome-database/references/api_reference.md, line 76
response = requests.get("https://reactome.org/ContentService/data/query/R-HSA-69278/displayName") - skills/reactome-database/references/api_reference.md, line 94
response = requests.get( - skills/reactome-database/references/api_reference.md, line 126
response = requests.get( - skills/reactome-database/references/api_reference.md, line 207
response = requests.post( - skills/reactome-database/references/api_reference.md, line 258
response = requests.get(f"https://reactome.org/AnalysisService/token/{token}") - skills/reactome-database/references/api_reference.md, line 372
result = requests.get(f"https://reactome.org/AnalysisService/token/{token}") - skills/reactome-database/references/api_reference.md, line 391
response = requests.post( - skills/reactome-database/references/api_reference.md, line 420
response = requests.post( - skills/reactome-database/scripts/reactome_query.py, line 36
response = requests.get(f"{self.CONTENT_BASE}/data/database/version") - skills/reactome-database/scripts/reactome_query.py, line 42
response = requests.get(f"{self.CONTENT_BASE}/data/query/{pathway_id}") - skills/reactome-database/scripts/reactome_query.py, line 48
response = requests.get(
and 3 more places
Safer alternatives
Low-risk skills in the same category (coding) that look related. Check that one does what you need.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'reactome-database' ] || [ -L ~/.agents/skills/'reactome-database' ]; then echo 'A skill folder named reactome-database already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/plurigrid/asi' "$d" && git -C "$d" checkout --quiet '293ce9f76e3abcd5ba18db284688bc0d9ac6691d' -- 'skills/reactome-database' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/reactome-database' ~/.agents/skills/'reactome-database' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'reactome-database' ~/.claude/skills/'reactome-database' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for plurigrid/asi shows the score of its lowest-scoring skill.
[](https://zalavijaysinh.github.io/skilltrust/repos/plurigrid/asi/)
Score history
| Date | Version | Score |
|---|
| 2026-11-07 | 293ce9f | 75 |