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pathml

80 / 100 · Low risk

Fine to try.

By plurigrid/asi (GitHub) · data · 72 stars · scanned at commit 293ce9f

Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'pathml' ] || [ -L ~/.agents/skills/'pathml' ]; then echo 'A skill folder named pathml already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/plurigrid/asi' "$d" && git -C "$d" checkout --quiet '293ce9f76e3abcd5ba18db284688bc0d9ac6691d' -- 'skills/pathml' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/pathml' ~/.agents/skills/'pathml' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'pathml' ~/.claude/skills/'pathml' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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