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biopython

80 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By plurigrid/asi (GitHub) · coding · 72 stars · scanned at commit 293ce9f

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'biopython' ] || [ -L ~/.agents/skills/'biopython' ]; then echo 'A skill folder named biopython already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/plurigrid/asi' "$d" && git -C "$d" checkout --quiet '293ce9f76e3abcd5ba18db284688bc0d9ac6691d' -- 'skills/biopython' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/biopython' ~/.agents/skills/'biopython' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'biopython' ~/.claude/skills/'biopython' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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