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ngs-shotgun-metagenomics

97 / 100 · Low risk

Fine to try.

By openai/plugins (GitHub) · other · 7,922 stars · scanned at commit d420d13

Kick off public shotgun metagenomics QC, host-depletion, taxonomic profiling, and functional profiling workflows using nf-core/taxprofiler, Kraken2, Bracken, MetaPhlAn, and HUMAnN.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'ngs-shotgun-metagenomics' ] || [ -L ~/.agents/skills/'ngs-shotgun-metagenomics' ]; then echo 'A skill folder named ngs-shotgun-metagenomics already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/openai/plugins' "$d" && git -C "$d" checkout --quiet 'd420d13051bffe4543ed39e30fa46b87148e47dd' -- 'plugins/ngs-analysis/skills/ngs-shotgun-metagenomics' && mkdir -p ~/.agents/skills && cp -R "$d"/'plugins/ngs-analysis/skills/ngs-shotgun-metagenomics' ~/.agents/skills/'ngs-shotgun-metagenomics' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'ngs-shotgun-metagenomics' ~/.claude/skills/'ngs-shotgun-metagenomics' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

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Score history

Also found in

Identical copies of this skill exist at:

• zhongjingyun/codex-plugins/plugins/ngs-analysis/skills/ngs-shotgun-metagenomics