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msa-structure-prediction-pipeline

95 / 100 · Low risk

Fine to try.

By NVIDIA/skills (GitHub) · coding · 3,933 stars · scanned at commit 2630133

NOTE: your protein sequence and the retrieved MSA alignment are transmitted to external NVIDIA-hosted APIs (health.api.nvidia.com) on every call. Use local NIM containers for confidential or proprietary sequences. Run a complete protein structure prediction pipeline using NVIDIA BioNeMo NIMs: search for MSA alignments with MSA-Search (ColabFold), then predict the structure with OpenFold3 using the retrieved alignments. Use this skill whenever the user wants to predict a protein structure with m…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'msa-structure-prediction-pipeline' ] || [ -L ~/.agents/skills/'msa-structure-prediction-pipeline' ]; then echo 'A skill folder named msa-structure-prediction-pipeline already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/NVIDIA/skills' "$d" && git -C "$d" checkout --quiet '2630133f22e357f2005886567a39eddcc1b520e2' -- 'skills/bionemo-msa-structure-prediction-pipeline' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bionemo-msa-structure-prediction-pipeline' ~/.agents/skills/'msa-structure-prediction-pipeline' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'msa-structure-prediction-pipeline' ~/.claude/skills/'msa-structure-prediction-pipeline' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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