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kermt-embed

90 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By NVIDIA/skills (GitHub) · coding · 3,933 stars · scanned at commit 2630133

Extract per-molecule embeddings from any encoder-bearing KERMT checkpoint. Use a local checkpoint or optionally download a pinned Hugging Face model bundle using HF_TOKEN if configured. Run containerized embedding extraction and write model bundles, per-readout .npy embeddings, canonical SMILES, and validity arrays to user-selected host directories.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'kermt-embed' ] || [ -L ~/.agents/skills/'kermt-embed' ]; then echo 'A skill folder named kermt-embed already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/NVIDIA/skills' "$d" && git -C "$d" checkout --quiet '2630133f22e357f2005886567a39eddcc1b520e2' -- 'skills/bionemo-kermt-embed' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bionemo-kermt-embed' ~/.agents/skills/'kermt-embed' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'kermt-embed' ~/.claude/skills/'kermt-embed' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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