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genomics-workflow-acceleration

100 / 100 · Low risk

Fine to try.

By NVIDIA/skills (GitHub) · coding · 3,933 stars · scanned at commit 2630133

Use when accelerating existing genomics workflows with NVIDIA Parabricks, improving runtime or price/performance, converting pipeline steps to GPUs, or comparing CPU and GPU workflow outputs. Adds optional GPU steps in-place with runtime toggles (default off). Do NOT use for individual pbrun command routing — use parabricks.

Works with any agent that supports SKILL.md skills.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'genomics-workflow-acceleration' ] || [ -L ~/.agents/skills/'genomics-workflow-acceleration' ]; then echo 'A skill folder named genomics-workflow-acceleration already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/NVIDIA/skills' "$d" && git -C "$d" checkout --quiet '2630133f22e357f2005886567a39eddcc1b520e2' -- 'skills/bionemo-genomics-workflow-acceleration' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bionemo-genomics-workflow-acceleration' ~/.agents/skills/'genomics-workflow-acceleration' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'genomics-workflow-acceleration' ~/.claude/skills/'genomics-workflow-acceleration' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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