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total-segmentator

80 / 100 · Low risk

Fine to try.

By mkurman/zorai (GitHub) · media · 327 stars · scanned at commit 8ea1fc3

Tool for robust segmentation of 104+ anatomical structures in CT images. Uses nnUNet-based models for whole-body, organ, and bone segmentation. One-line CLI for comprehensive body-part segmentation.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'total-segmentator' ] || [ -L ~/.agents/skills/'total-segmentator' ]; then echo 'A skill folder named total-segmentator already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mkurman/zorai' "$d" && git -C "$d" checkout --quiet '8ea1fc3ae126b6e103b8508bacd8f5aa60b6f4ad' -- 'skills/scientific-skills/total-segmentator' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/scientific-skills/total-segmentator' ~/.agents/skills/'total-segmentator' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'total-segmentator' ~/.claude/skills/'total-segmentator' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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