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protein-sequence-similarity-search

95 / 100 · Low risk

Fine to try.

By mkurman/zorai (GitHub) · other · 327 stars · scanned at commit 8ea1fc3

Searches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive, fallback). Trigger this whenever the user provides a protein sequence or FASTA file and asks to find homologues, sequence matches, or wants to infer protein function based on sequence similarity, but not when the user wants to infer protein function based on structural similarity.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'protein-sequence-similarity-search' ] || [ -L ~/.agents/skills/'protein-sequence-similarity-search' ]; then echo 'A skill folder named protein-sequence-similarity-search already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mkurman/zorai' "$d" && git -C "$d" checkout --quiet '8ea1fc3ae126b6e103b8508bacd8f5aa60b6f4ad' -- 'skills/scientific-skills-gdm/protein_sequence_similarity_search' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/scientific-skills-gdm/protein_sequence_similarity_search' ~/.agents/skills/'protein-sequence-similarity-search' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'protein-sequence-similarity-search' ~/.claude/skills/'protein-sequence-similarity-search' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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