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spatial-raw-processing

95 / 100 · Low risk

Fine to try.

By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1

Process barcoded spatial transcriptomics FASTQ pairs with st_pipeline, preserve upstream artifacts, convert the counts matrix into a standardized raw_counts.h5ad, and hand off cleanly to spatial-preprocess.

Works with any agent that supports SKILL.md skills.

What this skill can do

Other copies in this repository

mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- has 1 more folder with a skill named spatial-raw-processing. This page shows the lowest-scoring copy.

• Skills/External_Collections/OmicsClaw/skills/spatial/spatial-raw-processing 95/100 · Low risk

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'spatial-raw-processing' ] || [ -L ~/.agents/skills/'spatial-raw-processing' ]; then echo 'A skill folder named spatial-raw-processing already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/spatial/spatial-raw-processing' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/spatial/spatial-raw-processing' ~/.agents/skills/'spatial-raw-processing' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'spatial-raw-processing' ~/.claude/skills/'spatial-raw-processing' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history