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spatial-microenvironment-subset

95 / 100 · Low risk

Fine to try.

By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1

Extract a local spatial microenvironment by selecting cells or spots within a physical radius of a center population, preserving coordinates and labels in a downstream-ready h5ad subset for tumor microenvironment, neighborhood, spatial communication, and related downstream analyses.

Works with any agent that supports SKILL.md skills.

What this skill can do

Other copies in this repository

mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- has 1 more folder with a skill named spatial-microenvironment-subset. This page shows the lowest-scoring copy.

• Skills/External_Collections/OmicsClaw/skills/spatial/spatial-microenvironment-subset 95/100 · Low risk

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'spatial-microenvironment-subset' ] || [ -L ~/.agents/skills/'spatial-microenvironment-subset' ]; then echo 'A skill folder named spatial-microenvironment-subset already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/spatial/spatial-microenvironment-subset' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/spatial/spatial-microenvironment-subset' ~/.agents/skills/'spatial-microenvironment-subset' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'spatial-microenvironment-subset' ~/.claude/skills/'spatial-microenvironment-subset' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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