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sequence-similarity
90 / 100 · Low risk
Fine to try.
By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 23 places.
Show 17 more
- Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 58
psiblast -query protein.fasta -db nr \ - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 68
psiblast -query protein.fasta -db nr \ - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 92
jackhmmer -o results.txt -A aligned.sto --cpu 8 query.fasta database.fasta - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 98
hmmbuild profile.hmm alignment.sto - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 104
hmmsearch -o results.txt --tblout hits.tbl profile.hmm database.fasta - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 111
wget https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.gz - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 119
hmmscan --tblout pfam_hits.tbl --domtblout domains.tbl Pfam-A.hmm query.fasta - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 125
grep -v "^#" hits.tbl | head - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 150
makeblastdb -in species_A.fasta -dbtype prot -out species_A_db - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 157
blastp -query species_A.fasta -db species_B_db -outfmt 6 -evalue 1e-5 -max_target_seqs 1 > A_vs_B.txt - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 164
awk 'FNR==NR {a[$1]=$2; next} $2 in a && a[$2]==$1 {print $1"\t"$2}' \ - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 206
deltablast -query protein.fasta -db nr -rpsdb cdd_delta -out results.txt - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 214
phi_pattern="G-x(2)-[ST]-x-[RK]" - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 260
jackhmmer -N 5 -o results.txt --tblout hits.tbl query.fasta database.fasta - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 267
orthofinder -f proteomes/ -t 8 - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 274
mkdir proteomes - Skills/Research_Tools/Database_Access/sequence-similarity/SKILL.md, line 300
SPECIES_A=$1
and 3 more places
Sends data to these websites: ftp.ebi.ac.uk
The author does not mention this.
Found in 1 place.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'sequence-similarity' ] || [ -L ~/.agents/skills/'sequence-similarity' ]; then echo 'A skill folder named sequence-similarity already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/Research_Tools/Database_Access/sequence-similarity' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/Research_Tools/Database_Access/sequence-similarity' ~/.agents/skills/'sequence-similarity' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'sequence-similarity' ~/.claude/skills/'sequence-similarity' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/)
Score history
| Date | Version | Score |
|---|
| 2026-11-13 | fde6cd1 | 90 |
| 2026-11-07 | 839c35a | 100 |
Also found in
Identical copies of this skill exist at:
- BioTender-max/awesome-bio-agent-skills/skills/openclaw/bio-sequence-similarity
- lilinji/GeneTind-Life-Skills/skills/bio-sequence-similarity