← All skills
plink-basics
95 / 100 · Low risk
Fine to try.
By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 22 places.
Show 17 more
- Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 93
plink --bfile input --recode --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 103
plink2 --bfile input --make-pgen --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 115
plink --bfile input --maf 0.01 --make-bed --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 128
plink2 --bfile input --geno 0.05 --make-bed --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 138
plink2 --bfile input --hwe 1e-6 --make-bed --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 148
plink2 --bfile input \ - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 162
plink2 --bfile input --keep samples.txt --make-bed --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 175
plink2 --bfile input --extract variants.txt --make-bed --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 188
plink2 --bfile input --chr 22 --make-bed --out chr22 - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 201
plink --bfile input --freq --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 214
plink2 --bfile input --missing --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 227
plink --bfile input --check-sex --out sex_check - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 252
plink2 --bfile input --update-sex sex_check.sexcheck col-num=4 --make-bed --out updated - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 265
plink2 --bfile input --pheno phenotypes.txt --make-bed --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 275
plink2 --bfile input --update-sex sex.txt --make-bed --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 282
plink2 --bfile input --update-ids ids.txt --make-bed --out output - Skills/Population_Genetics/population-genetics/plink-basics/SKILL.md, line 289
plink --bfile data1 --bmerge data2.bed data2.bim data2.fam --make-bed --out merged
and 2 more places
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'plink-basics' ] || [ -L ~/.agents/skills/'plink-basics' ]; then echo 'A skill folder named plink-basics already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/Population_Genetics/population-genetics/plink-basics' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/Population_Genetics/population-genetics/plink-basics' ~/.agents/skills/'plink-basics' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'plink-basics' ~/.claude/skills/'plink-basics' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/)
Score history
| Date | Version | Score |
|---|
| 2026-11-13 | fde6cd1 | 95 |
| 2026-11-07 | 839c35a | 95 |