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modern-tree-inference
95 / 100 · Low risk
Fine to try.
By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 13 places.
Show 10 more
- Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 114
cat > partitions.nex << 'EOF' - Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 138
raxml-ng --all --msa alignment.fasta --model GTR+G --bs-trees 100 - Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 150
raxml-ng --msa alignment.fasta --model GTR+G4+I - Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 175
raxml-ng --msa alignment.fasta --model GTR+G --tree pars{10} --prefix ml_search - Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 200
iqtree2 -s large.fasta -m GTR+G -B 1000 -T 4 -mem 8G - Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 213
iqtree2 -s alignment.fasta -m GTR+G -z trees.nwk -n 0 -zb 10000 -au - Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 224
iqtree2 -s alignment.fasta -m GTR+G -g constraint.tre -B 1000 - Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 234
iqtree2 -s alignment.fasta -m GTR+G -n 0 - Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 250
iqtree2 -s alignment.fasta -m GTR+G -B 1000 --redo-tree - Skills/Population_Genetics/phylogenetics/modern-tree-inference/SKILL.md, line 261
iqtree2 -s alignment.fasta -m GTR+G -B 1000 --seed 12345
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'modern-tree-inference' ] || [ -L ~/.agents/skills/'modern-tree-inference' ]; then echo 'A skill folder named modern-tree-inference already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/Population_Genetics/phylogenetics/modern-tree-inference' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/Population_Genetics/phylogenetics/modern-tree-inference' ~/.agents/skills/'modern-tree-inference' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'modern-tree-inference' ~/.claude/skills/'modern-tree-inference' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/)
Score history
| Date | Version | Score |
|---|
| 2026-11-13 | fde6cd1 | 95 |
| 2026-11-07 | 839c35a | 95 |