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BioMCP
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Check before installing.
By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1
Works with any agent that supports SKILL.md skills.
Partially scanned — some files couldn't be read; we'll retry on the next scan
What this skill can do
Downloads and installs other software
The author does not mention this.
Found in 30 places.
Show 17 more
- Skills/MCP_Servers/BioMCP/repo/Dockerfile, line 22
RUN pip install --upgrade pip && pip install .[worker] - Skills/MCP_Servers/BioMCP/repo/Dockerfile, line 26
pip install /tmp/alphagenome && \ - Skills/MCP_Servers/BioMCP/repo/Makefile, line 40
@uvx --from build pyproject-build --installer uv - Skills/MCP_Servers/BioMCP/repo/Makefile, line 50
@uvx twine upload -r pypi dist/* - Skills/MCP_Servers/BioMCP/repo/Makefile, line 80
npx @modelcontextprotocol/inspector uv run --with . biomcp run - Skills/MCP_Servers/BioMCP/repo/README.md, line 232
brew install uv - Skills/MCP_Servers/BioMCP/repo/README.md, line 235
pip install uv - Skills/MCP_Servers/BioMCP/repo/README.md, line 258
pip install biomcp-python - Skills/MCP_Servers/BioMCP/repo/README.md, line 261
uv pip install biomcp-python - Skills/MCP_Servers/BioMCP/repo/README.md, line 398
npx @modelcontextprotocol/inspector uv run --with biomcp-python biomcp run - Skills/MCP_Servers/BioMCP/repo/docs/apis/python-sdk.md, line 21
pip install biomcp-python - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/07-alphagenome.md, line 72
pip install . - Skills/MCP_Servers/BioMCP/repo/docs/developer-guides/01-server-deployment.md, line 150
RUN pip install biomcp-python - Skills/MCP_Servers/BioMCP/repo/docs/developer-guides/01-server-deployment.md, line 169
RUN apt-get update && apt-get install -y git - Skills/MCP_Servers/BioMCP/repo/docs/developer-guides/01-server-deployment.md, line 172
RUN pip install biomcp-python - Skills/MCP_Servers/BioMCP/repo/docs/developer-guides/01-server-deployment.md, line 177
pip install . - Skills/MCP_Servers/BioMCP/repo/docs/developer-guides/02-contributing-and-testing.md, line 256
npm install -g @modelcontextprotocol/inspector
and 10 more places
Sends data to these websites: mygene.info, myvariant.info, mydisease.info, mychem.info, clinicaltrials.gov
The author does not mention this.
Found in 61 places.
Show 17 more
- Skills/MCP_Servers/BioMCP/repo/README.md, line 172
fetch(domain="trial", id="NCT04280705", detail="all") - Skills/MCP_Servers/BioMCP/repo/README.md, line 175
fetch(domain="variant", id="rs113488022") - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 65
curl "https://mygene.info/v1/query?q=BRAF&fields=symbol,name,summary,type_of_gene" - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 83
curl "https://mygene.info/v1/gene/673?fields=symbol,name,summary,genomic_pos,pathway,go" - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 121
curl "https://myvariant.info/v1/query?q=dbnsfp.genename:TP53&fields=_id,clinvar,gnomad_exome" - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 175
curl "https://mydisease.info/v1/query?q=melanoma&fields=mondo,disease_ontology,synonyms" - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 217
curl "https://mychem.info/v1/query?q=imatinib&fields=drugbank,chembl,chebi" - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 248
gene_response = requests.get( - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 254
variant_response = requests.get( - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 268
disease_response = requests.get( - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 287
drug_response = requests.get( - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 321
response = requests.post( - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 328
requests.get(f"https://mygene.info/v1/gene/{gene}") - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 377
response = requests.get(api_url, params=query_params) - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/02-biothings-suite.md, line 488
response = requests.get( - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/04-clinicaltrials-gov.md, line 60
curl -X GET "https://clinicaltrials.gov/api/v2/studies?query.cond=Melanoma&query.intr=BRAF" - Skills/MCP_Servers/BioMCP/repo/docs/backend-services-reference/04-clinicaltrials-gov.md, line 72
curl -X GET "https://clinicaltrials.gov/api/v2/studies/NCT04267848"
and 41 more places
Reads your saved credentials, such as SSH keys or .env files
The author does not mention this.
Found in 1 place.
Changes files outside its own folder
The author does not mention this.
Found in 1 place.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'biomcp' ] || [ -L ~/.agents/skills/'biomcp' ]; then echo 'A skill folder named biomcp already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/MCP_Servers/BioMCP' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/MCP_Servers/BioMCP' ~/.agents/skills/'biomcp' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'biomcp' ~/.claude/skills/'biomcp' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/)
Score history
| Date | Version | Score |
|---|
| 2026-11-13 | fde6cd1 | 50 |
| 2026-11-07 | 839c35a | 80 |
Also found in
Identical copies of this skill exist at:
- BioTender-max/awesome-bio-agent-skills/skills/openclaw/biomcp-server
- lilinji/GeneTind-Life-Skills/skills/biomcp-server