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strain-tracking
80 / 100 · Low risk
Fine to try.
By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 16 places.
Show 13 more
- Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 85
mash triangle genomes/*.fasta > distances.phylip - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 96
conda install -c bioconda sourmash - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 103
sourmash sketch dna -p scaled=1000,k=31 genome.fasta -o genome.sig - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 116
sourmash compare *.sig -o comparison.npy --csv comparison.csv - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 129
sourmash database download gtdb-rs214-k31.zip - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 143
conda install -c bioconda fastani - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 150
fastANI -q query.fasta -r reference.fasta -o ani_result.txt - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 174
conda install -c bioconda instrain - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 181
bowtie2 -x reference -1 reads_1.fq -2 reads_2.fq | \ - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 192
for bam in sample*.bam; do - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 204
cat instrain_output/output/SNVs.tsv - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/SKILL.md, line 217
set -euo pipefail - Skills/Genomics/Metagenomics/bioSkills/strain-tracking/examples/sourmash_gather.py, line 56
subprocess.run(cmd.split(), check=True)
Downloads and installs other software
The author does not mention this.
Found in 2 places.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'strain-tracking' ] || [ -L ~/.agents/skills/'strain-tracking' ]; then echo 'A skill folder named strain-tracking already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/Genomics/Metagenomics/bioSkills/strain-tracking' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/Genomics/Metagenomics/bioSkills/strain-tracking' ~/.agents/skills/'strain-tracking' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'strain-tracking' ~/.claude/skills/'strain-tracking' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/)
Score history
| Date | Version | Score |
|---|
| 2026-11-13 | fde6cd1 | 80 |
| 2026-11-07 | 839c35a | 80 |