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basecalling
80 / 100 · Low risk
Fine to try.
By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 34 places.
Show 17 more
- Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 65
dorado download --list - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 71
dorado basecaller sup pod5_dir/ --emit-fastq > calls.fastq - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 77
dorado basecaller sup,5mCG_5hmCG pod5_dir/ > calls_mods.bam - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 85
dorado basecaller sup pod5_dir/ --device cuda:0 > calls.bam - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 93
dorado basecaller sup pod5_dir/ --batchsize 64 > calls.bam - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 99
dorado duplex sup pod5_dir/ > duplex.bam - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 105
dorado basecaller sup pod5_dir/ --kit-name SQK-NBD114-24 > calls.bam - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 112
dorado basecaller sup pod5_dir/ --trim adapters > calls.bam - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 119
dorado basecaller sup pod5_dir/ --resume-from calls.bam > calls_complete.bam - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 129
guppy_basecaller \ - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 139
guppy_basecaller \ - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 150
guppy_basecaller \ - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 160
guppy_basecaller \ - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 170
guppy_basecaller --print_workflows - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 177
guppy_basecaller \ - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 187
guppy_basecaller \ - Skills/Genomics/long-read-sequencing/basecalling/SKILL.md, line 198
guppy_basecaller \
and 14 more places
Downloads and installs other software
The author does not mention this.
Found in 1 place.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'basecalling' ] || [ -L ~/.agents/skills/'basecalling' ]; then echo 'A skill folder named basecalling already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/Genomics/long-read-sequencing/basecalling' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/Genomics/long-read-sequencing/basecalling' ~/.agents/skills/'basecalling' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'basecalling' ~/.claude/skills/'basecalling' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/)
Score history
| Date | Version | Score |
|---|
| 2026-11-13 | fde6cd1 | 80 |
| 2026-11-07 | 839c35a | 80 |